Servers

ArrayMining

Online microarray data mining tool. It uses ensemble and consensus methods for statistical analysis of the gene expression data. Access ArrayMining online.

BacillOndex

A semantically-enriched, integrated knowledge base for information about genome annotations, gene regulatory networks, functional interactions, metabolic pathways and microarray experiments. Access BacillOndex online.

BacillusRegNet

A database and a cross-species analysis platform for the transcriptional gene regulatory networks of Bacillus species. Access BacillusRegNet online.

EnrichNet

A server performing enrichment analysis. This is based on protein interaction network to detect associations between gene/protein sets. Access EnrichNet online.

Entanglement

A high-performance graph framework designed for large-scale data integration tasks. Access Entanglement online.

Microbase

A distributed workflow enactor for data and compute intensive applications. Access Microbase online.

MoSeC

A tool to automate the conversion of dynamic models of complex genetic circuits into nucleotide sequences ready for synthesising. Access MoSeC online.

PathExpand

A method for expanding the gene sets from cellular pathways with their interaction partners in protein-protein interaction networks. Access PathExpand online.

PM-CMP

Scalable service for automated comparison of large number of protein models. It is implemented on the Google App Engine cloud platform.

ProCKSI

Protein structure comparison server. It computes a similarity consensus based on variety of measures. It provides tools for structural classification. Access ProCKSI online.

PSP Server

Collection of web services. These address protein structure prediction (PSP) sub-problems using Learning Classifier Systems.

SBOL Stack

A platform to store information about genetic parts using the Synthetic Biology Open Language (SBOL) format. Access SBOL Stack online.

SVPs

Standard Virtual Parts (SVPs) is a mapping between genetic parts and their reusable, modular and composable models. Access SVPs online.

TopoGSA

A web-tool to visualise and compare network topological properties of gene or protein sets mapped onto interaction networks. Acces TopoGSA online.

Virtual Parts

A database of computationally-accessible models (SVPs) of biological parts. It facilitates model-based design in synthetic biology. Access Virtual Parts online.