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Zeiss AxioImager with Apotome (System 3)

Modalities: upright, widefield

Overview

The Zeiss AxioImager is a high quality wide field imaging system that offers three modes of operation:

  • Brightfield transmitted light (phase and DIC)
  • Wide field fluorescence
  • Apotome structured illumination (confocal like) fluorescence

The system utilises two separate camera systems for colour and monochrome imaging.

The Apotome (structured illumination) mode allows users to collect confocal-like images and ‘Z’ stacks, which can subsequently be projected as 3D images (stereo anaglyphs) and movies.

A range of fluorescent filters are available which cover the commonly used dyes:

  • DAPI
  • FITC
  • TRITC and CY5

the illumination source is Colibri LED fluorescent light.

The microscope has as an autofocus system and a precision motorised stage which enables users to automatically acquire tiled images from large specimens (or from an entire slide) and stitch them together post capture.

Analysis of data and images can be carried out using the ZEN blue software which includes quantification and colocalisation modules.

Imaging modes

  • Wide field fluorescence
  • Brightfield
  • Multi-point x,y (2D) with tiling
  • Volume x,y,z (3D)
  • Structured illumination (Apotome, fluorescence only)
  • Phase contrast
  • DIC 

Specification

Here you can find the specifications for this microscope.

Objectives

Magnification

NA

Coverslip

Other modes

Immersion

2.5 0.075     Air
5 0.16 0.17   Air
10 0.3 0.17   Air
20 0.5 0.17   Air
40 1.3 0.17 DIC Oil
63 1.4 0.17   Oil

Filters (epi)

Cube

Example fluorophores

Excitation

Dichroic

Emission

Part number

Zeiss 49 DAPI, Hoechst 335-385 395 420-470  
Zeiss 38 HE GFP, FITC, AF488 450-490 495 500-550  
Zeiss 46 HE FITC+AF488 487-512 515 520-550  
Zeiss 20 HE TRITC, Rhodamine 540-552 560 575-640  
Zeiss 50 CY5, Af647 625-655 660 665-715  

Light source (epi)

Colibri’ 1- LED fluorescent light (365,470,555,625)

Detectors (cameras)

Zeiss HRm (Monochrome for fluorescence imaging)

Location

West Wing, International Centre for Life, room B162

Newcastle University
International Centre for Life
Central Parkway
Newcastle upon Tyne
NE1 3BZ

Booking

Find out how to book this microscope.

Booking information

  • The minimal booking time for this system is 30 minutes. 
  • Time increments of 15 minutes are permitted. 
  • Bookings can be cancelled with no charge up to an hour before scheduled use. 

Training

Here you find useful training videos for the system.

Zen Blue software tutorial

Explore Zen