Our Equpiment
Newcastle University's Bio Screening Facility has a wide range of equipment available.
Software
Colonyzer
Colonyzer is an image analysis tool for quantifying the cell density of arrays of independent micro-organism cultures growing on solid agar.
DIXY
Dixy is a web application for producing Dynamic, Interactive XY plots of data.
Image Lab
Image LabTM - Gel image analysis
MARS
MARSTM - Microplate Data Analysis BMG Labtech
QFA R Package
qfaR: tools for Quantitative Fitness Analysis
QFA Website
QFA website - during Quantitative Fitness Analysis (QFA) we generate microbial growth curves by repeatedly photographing microbial cultures as they grow in regular arrays on solid agar plates.
QuantStudio v1.3
QuantStudio 7 Flex, SDS 2.4, RQ Manager
SDS 2.4 ,RQ Manager
Wasp Labeler +2D (V7)
Wasp Labeler +2D (V7) - Barcoding, 2D barcoding, QR coding
Useful links
Saccharomyces Genome Database
The Saccharomyces Genome Database (SGD) provides comprehensive integrated biological information for the budding yeast Saccharomyces cerevisiae along with search and analysis tools to explore these data, enabling the discovery of functional relationships between sequence and gene products in fungi and higher organisms.
PomBase
PomBase is a comprehensive database for the fission yeast Schizosaccharomyces pombe, providing structural and functional annotation, literature curation and access to large-scale data sets.
R Programming Courses
Jumping Rivers Ltd provides training, consulting and dashboard development. Training covers R, Shiny, Stan and Scala, ringing from introductory programming, to cutting edge machine learning topics.
SNP Genotyping Analysis Using Taqman Assays
SNP Genotyping Analysis Using TaqMan Assays A comprehensive list of the pre-designed ThermoFisherTaqMan assays for more 17 million SNPs of interest. The assays are available in 48-, 96- and 384-well format and each includes two allele-specific TaqMan MGB probes containing distinct fluorescent dyes and a PCR primer pair to detect specific SNP targets.
Taqman Advanced miRNA Assays
TaqMan Advanced miRNA Assays for the identification of pre-designed ThermoFisher TaqMan assays for the specific quantification of mature miRNAs using qPCR. These assays are used in tandem with the TaqMan Advanced miRNA cDNA Synthesis Kit, allowing the detection of multiple miRNA targets from a single sample. These assay can be used on both isolated total RNA or serum and plasma.
PrimePCR™ PCR Primers, Assays, and Arrays
PrimePCR™ PCR Primers, Assays, and Arrays A tool to explore the collection of Bio-Rad PrimePCR™ PCR Primers, Assays, and Arrays for real time expression analysis. The assays come as unlabeled PCR primer pairs for use with dye-based chemistry (such as SYBR® Green - PrimePCR™ SYBR® Green Assay) or as probe assays with unlabeled PCR primers and a dual labeled fluorescent probe (PrimePCR™ Probe Assay as in TaqMan assays). Also available are positive controls for the qPCR (PrimerPCR template) and primer sets for the specific pre-amplification of the cDNA (PrimerPCR PreaAmp). Of note: these assays require a lead time of 3-4 weeks.